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Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
8OI6
pdb_00008oi6
10.2210/pdb8oi6/pdb
Download file
FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
actin-phalloidin complex
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE-PROPANE
Sample Vitrification Details
?
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
43618
Reported Resolution (Å)
3.59
Resolution Method
FSC 0.143 CUT-OFF
Other Details
Performed in CryoSPARC. All barbed end particles were isolated from from other particles that represented pointed end and filament core.
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
FLEXIBLE FIT
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
Real space refinement in phenix.
Data Acquisition
Detector Type
FEI FALCON III (4k x 4k)
Electron Dose (electrons/Å
2
)
56
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
FEI TALOS ARCTICA
Minimum Defocus (nm)
1200
Maximum Defocus (nm)
2700
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2.7
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification
120000
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
200
Imaging Details
Microsope alignment was performed using SHERPA (Thermo Fisher)
Imaging Experiment
Task
Software Package
Version
PARTICLE SELECTION
crYOLO
1.8
IMAGE ACQUISITION
EPU
?
CTF CORRECTION
CTFFIND
4.13
MODEL FITTING
Coot
0.9.8.1
MODEL REFINEMENT
PHENIX
1.20.1-4487-000
INITIAL EULER ASSIGNMENT
cryoSPARC
3.3.2
FINAL EULER ASSIGNMENT
cryoSPARC
3.3.2
CLASSIFICATION
cryoSPARC
3.3.2
RECONSTRUCTION
cryoSPARC
3.3.2
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION
?