ELECTRON MICROSCOPY

Sample

Elongating E. coli 70S ribosome with deacylated tRNA(iMet) in the P-site and mRNA containing AAA codon and dipeptidyl-tRNA(Lys) in the A-site

Specimen Preperation
Sample Aggregation State PARTICLE
Vitrification Instrument FEI VITROBOT MARK IV
Cryogen Name ETHANE
Sample Vitrification Details ?
3D Reconstruction
Reconstruction Method SINGLE PARTICLE
Number of Particles 103992
Reported Resolution (Å) 2.33
Resolution Method FSC 0.143 CUT-OFF
Other Details ?
Refinement Type
Symmetry Type POINT
Map-Model Fitting and Refinement
ID 1
Refinement Space REAL
Refinement Protocol RIGID BODY FIT
Refinement Target ?
Overall B Value ?
Fitting Procedure ?
Details Following rigid body fitting we used online Namdiantor tool to perform initial flexible fitting: https://namdinator.au.dk/namdinator/
Data Acquisition
Detector Type GATAN K3 BIOQUANTUM (6k x 4k)
Electron Dose (electrons/Å2) 40
Imaging Experiment
Date of Experiment ?
Temprature (Kelvin)
Microscope Model TFS KRIOS
Minimum Defocus (nm) 900
Maximum Defocus (nm) 2100
Minimum Tilt Angle (degrees) ?
Maximum Tilt Angle (degrees) ?
Nominal CS 2.7
Imaging Mode BRIGHT FIELD
Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification ?
Calibrated Magnification 105000
Source FIELD EMISSION GUN
Acceleration Voltage (kV) 300
Imaging Details ?
Imaging Experiment
Task Software Package Version
PARTICLE SELECTION cryoSPARC 3.3.0
IMAGE ACQUISITION EPU 2.1
CTF CORRECTION cryoSPARC 3.3.0
MODEL FITTING UCSF ChimeraX 1.2.5
INITIAL EULER ASSIGNMENT cryoSPARC 3.3.0
CLASSIFICATION cryoSPARC 3.3.0
RECONSTRUCTION cryoSPARC 3.3.0
MODEL REFINEMENT PHENIX Online
MODEL FITTING ISOLDE 1.4
MODEL REFINEMENT PHENIX 1.19.2-4158
Image Processing
CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION ?