X-RAY DIFFRACTION

Crystallization Details
Method pH Temprature Details
X-RAY DIFFRACTION 7.5 289 The compound was dissolved in 100% DMSO to 50 mM concentration (2.30 mg + 86.2 uL DMSO). 15 uL galectin-3C (20 mg/ml in 10 mM Na phosphate buffer pH 7.4, 100 mM NaCl, 10 mM b-mercaptoethanol) were mixed with 0.5 uL compound solution. The sample was then centrifuged at 13 500 rpm for 5 min. A seed bead solution (Hampton Research) was used made from crushed apo galectin-3C crystals. The 40-fold diluted seed solution (diluted with reservoir solution similar to described below) was used to seed the crystallisation drops. The drops were set up in MRC 3-well plates and stored at 16C as follows: 200 nL galectin-3C complex + 30 nL app galectin-3C seed stock + 200 nL reservoir solution and equilibrated against 40 uL of reservoir containing 30% PEG 4000, 0.1 M Tris/HCl pH 7.5, 0.1 M MgCl2, 7.9 mM b- mercaptoethanol. Large crystals (0.1 - 0.2 mm) were briefly soaked in a cryoprotectant solution with the following composition: 25.5 % PEG 4000 15 % glycerol 85 mM Tris/HCl pH 7.5 85 mM MgCl2 250 mM NaSCN 8 mM b-mercaptoethanol 1 mM compound After soaking the crystals were flash-cooled in liquid N2.
Unit Cell:
a: 36.404 Å b: 58.088 Å c: 62.575 Å α: 90.000° β: 90.000° γ: 90.000°
Symmetry:
Space Group: P 21 21 21
Crystal Properties:
Matthew's Coefficient: 2.11 Solvent Content: 41.72
Refinement Statistics
Diffraction ID Structure Solution Method Cross Validation Method Resolution Limit (High) Resolution Limit (Low) Number of Reflections (Observed) Number of Reflections (R-free) Percent Reflections (Observed) R-Work R-Free Mean Isotropic
X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.0500 29.0600 59384 3239 99.9100 0.1097 0.1291 11.7450
Data Collection
Overall
Resolution Limit (High) Resolution Limit (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.05 29.06 100.0 0.037 ? 21.1 6.1 ? 383590 ? ? ?
Highest Resolution Shell
# Resolution Limits (Low) Resolution Limits (High) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1 1.05 1.07 ? ? ? 3.0 ? ?
Diffraction
Diffraction experiment
Crystal ID Scattering Type Data Collection Temprature Detector Detector Type Details Collection Date Monochromator Protocol
1 100 K ?
Radiation Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06DA 1 SLS X06DA
Software
Software Name Purpose Version
REFMAC refinement 5.8.0238
PDB_EXTRACT data extraction 3.27
XDS data reduction .
XDS data scaling .
PHASER phasing .