SOLUTION NMR

NMR Experiment
Experiment Type Sample Contents Ionic Strength Solvent pH Pressure Temprature (K)
1 3D_13C,15N-SEPARATED_NOESY SPECTRA 0.79 mM [U-99% 13C; U-99% 15N] human mitochondrial RbfA, 100 mM non NaCl, 1 mM [U-99% 2H] d-DTT, 20 mM [U-99% 2H] d-Tris HCl, 0.02 % w/v non NaN3, 90% H2O/10% D2O 100 90% H2O/10% D2O 7 1 298
2 3D CBCA(CO)NH 0.79 mM [U-99% 13C; U-99% 15N] human mitochondrial RbfA, 100 mM non NaCl, 1 mM [U-99% 2H] d-DTT, 20 mM [U-99% 2H] d-Tris HCl, 0.02 % w/v non NaN3, 90% H2O/10% D2O 100 90% H2O/10% D2O 7 1 298
3 3D HNCACB 0.79 mM [U-99% 13C; U-99% 15N] human mitochondrial RbfA, 100 mM non NaCl, 1 mM [U-99% 2H] d-DTT, 20 mM [U-99% 2H] d-Tris HCl, 0.02 % w/v non NaN3, 90% H2O/10% D2O 100 90% H2O/10% D2O 7 1 298
4 3D HCCH-COSY 0.79 mM [U-99% 13C; U-99% 15N] human mitochondrial RbfA, 100 mM non NaCl, 1 mM [U-99% 2H] d-DTT, 20 mM [U-99% 2H] d-Tris HCl, 0.02 % w/v non NaN3, 90% H2O/10% D2O 100 90% H2O/10% D2O 7 1 298
5 3D HCCH-TOCSY 0.79 mM [U-99% 13C; U-99% 15N] human mitochondrial RbfA, 100 mM non NaCl, 1 mM [U-99% 2H] d-DTT, 20 mM [U-99% 2H] d-Tris HCl, 0.02 % w/v non NaN3, 90% H2O/10% D2O 100 90% H2O/10% D2O 7 1 298
NMR Spectrometer Information
Spectrometer Manufacturer Model Field Strength
NMR Refinement
Method Details Software
simulated annealing The structures are refined based on 1463 distant constraints derived from NOE and estimated hydrogen bonds, and 212 dihedral constraints estimated from NOE data and TALOS program. 1
NMR Ensemble Information
Conformer Selection Criteria structures with the least restraint violations
Conformers Calculated Total Number 200
Conformers Submitted Total Number 20
Representative Model 1 (lowest energy)
Computation: NMR Software
# Classification Version Software Name Author
1 refinement 12 Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
2 structure calculation 2-1 CYANA Guntert, Mumenthaler and Wuthrich
3 chemical shift assignment 0.863 KUJIRA N. Kobayashi, T. Kigawa, S. Yokoyama
5 peak picking 5.0.4 NMRView Johnson, One Moon Scientific
6 processing 2007 NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4 geometry optimization 2007 TALOS Cornilescu, Delaglio and Bax