Home
About
Browse
Covid-19
Organism Classification
Alphafold Collection
Indian Data
Contact
Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
7P2P
ELECTRON MICROSCOPY
Sample
Signal peptidase complex paralog A (SPC-A)
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE
Sample Vitrification Details
Blot for 4s with blot force 0 before plunging.
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
29508
Reported Resolution (Å)
4.9
Resolution Method
FSC 0.143 CUT-OFF
Other Details
?
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
AB INITIO MODEL
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
?
Data Acquisition
Detector Type
GATAN K2 SUMMIT (4k x 4k)
Electron Dose (electrons/Å
2
)
63
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
FEI TALOS ARCTICA
Minimum Defocus (nm)
1000
Maximum Defocus (nm)
4000
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2.7
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification
165000
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
200
Imaging Details
200 kV Talos Arctica at Utrecht University, the Netherlands. Same settings were used for both grid conditions.
Imaging Experiment
Task
Software Package
Version
IMAGE ACQUISITION
EPU
?
CTF CORRECTION
CTFFIND
4.0
CTF CORRECTION
RELION
3.1
MODEL FITTING
Coot
0.9
INITIAL EULER ASSIGNMENT
RELION
3.1
FINAL EULER ASSIGNMENT
RELION
3.1
CLASSIFICATION
RELION
3.1
RECONSTRUCTION
RELION
3.1
MODEL REFINEMENT
PHENIX
1.18.2
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION
?