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SOLUTION NMR


NMR Experiment
Experiment Type Sample Contents Ionic Strength Solvent pH Pressure Temprature (K)
1 2D 1H-1H COSY 3.3 mM oxytocin, 5 mM ammonium acetate buffer, 10 % v/v [U-100% 2H] D2O, 90 % v/v H2O, 0.33 mM CuCl2, 90% H2O/10% D2O 14.9 90% H2O/10% D2O 6.7 1 293.2
2 2D 1H-1H TOCSY 3.3 mM oxytocin, 5 mM ammonium acetate buffer, 10 % v/v [U-100% 2H] D2O, 90 % v/v H2O, 0.33 mM CuCl2, 90% H2O/10% D2O 14.9 90% H2O/10% D2O 6.7 1 293.2
3 2D 1H-1H ROESY 3.3 mM oxytocin, 5 mM ammonium acetate buffer, 10 % v/v [U-100% 2H] D2O, 90 % v/v H2O, 0.33 mM CuCl2, 90% H2O/10% D2O 14.9 90% H2O/10% D2O 6.7 1 293.2
NMR Spectrometer Information
Spectrometer Manufacturer Model Field Strength
1 Bruker AVANCE II 500
NMR Refinement
Method Details Software
DGSA-distance geometry simulated annealing XPLOR-NIH 5
NMR Ensemble Information
Conformer Selection Criteria structures with the lowest energy
Conformers Calculated Total Number 50
Conformers Submitted Total Number 10
Representative Model 1 (lowest energy)
Computation: NMR Software
# Classification Version Software Name Author
1 collection ? TopSpin Bruker Biospin
2 peak picking 1.470 NMRFAM-SPARKY Lee, W.; Tonelli, M.; Markley, J. L. NMRFAM-SPARKY: Enhanced Software for Biomolecular NMR Spectroscopy. Bioinformatics 2015, 31 (8), 1325-1327.
3 chemical shift assignment 1.470 NMRFAM-SPARKY Lee, W.; Tonelli, M.; Markley, J. L. NMRFAM-SPARKY: Enhanced Software for Biomolecular NMR Spectroscopy. Bioinformatics 2015, 31 (8), 1325-1327.
4 chemical shift assignment 1.470 NMRFAM-SPARKY Lee, W.; Tonelli, M.; Markley, J. L. NMRFAM-SPARKY: Enhanced Software for Biomolecular NMR Spectroscopy. Bioinformatics 2015, 31 (8), 1325-1327.
5 structure calculation ? CNS Schwieters, C. D.; Kuszewski, J. J.; Tjandra, N.; Clore, G. M. The Xplor-NIH NMR Molecular Structure Determination Package. J. Magn. Reson. 2003, 160 (1), 65
6 data analysis 1.14 UCSF Chimera Pettersen, E. F.; Goddard, T. D.; Huang, C. C.; Couch, G. S.; Greenblatt, D. M.; Meng, E. C.; Ferrin, T. E. UCSF Chimera - A Visualization System for Exploratory Research and Analysis. J. Comput. Chem. 2004, 25 (13), 1605-1612.
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