ELECTRON MICROSCOPY


Sample

ODA complex

Specimen Preperation
Sample Aggregation State FILAMENT
Vitrification Instrument FEI VITROBOT MARK IV
Cryogen Name ETHANE
Sample Vitrification Details 2.5 ul of splayed axoneme solution was then dispensed onto glow-discharged C-Flat 1.2/1.3-4Cu grids inside a Vitrobot Mark IV under 100% humidity. After a 10 s delay time, cryo-EM samples were prepared by first blotting for 10 s with blot force set to 16 and immediately plunged into liquid ethane.
3D Reconstruction
Reconstruction Method HELICAL
Number of Particles 485694
Reported Resolution (Å) 7.5
Resolution Method FSC 0.143 CUT-OFF
Other Details The composite map varies in resolution from 3.5 to 12 A. The reference map is 7.5 A.
Refinement Type
Symmetry Type HELICAL
Map-Model Fitting and Refinement
ID 1
Refinement Space REAL
Refinement Protocol OTHER
Refinement Target Correlation coefficient
Overall B Value ?
Fitting Procedure ?
Details ?
Data Acquisition
Detector Type GATAN K3 BIOQUANTUM (6k x 4k)
Electron Dose (electrons/Å2) 61.48
Imaging Experiment
Date of Experiment ?
Temprature (Kelvin)
Microscope Model TFS KRIOS
Minimum Defocus (nm) ?
Maximum Defocus (nm) ?
Minimum Tilt Angle (degrees) ?
Maximum Tilt Angle (degrees) ?
Nominal CS 2.7
Imaging Mode BRIGHT FIELD
Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification ?
Calibrated Magnification ?
Source FIELD EMISSION GUN
Acceleration Voltage (kV) 300
Imaging Details ?
Imaging Experiment
Task Software Package Version
PARTICLE SELECTION RELION 3.1
IMAGE ACQUISITION SerialEM 3.6 and 3.7
CTF CORRECTION CTFFIND 4
MODEL FITTING Coot 0.9.1
MODEL REFINEMENT PHENIX 1.18.2
INITIAL EULER ASSIGNMENT RELION 3.1
FINAL EULER ASSIGNMENT RELION 3.1
CLASSIFICATION RELION 3.1
RECONSTRUCTION RELION 3.1
Image Processing
CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION The composite map was assembled on a box 700 reference map (7.5 A) using the ODA-DC and ODA core composite maps (deposited separately), and maps targeting the aHC AAA+ domain (4.5 A), bHC AAA+ domain (6.2 A), aHC AAA+ domain (11.4 A), and aHC tail domain (5.3 A). A second conformation of bHC AAA+ domain (9.8 A) is also provided.
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