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Organism Classification
Alphafold Collection
Indian Data
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Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
6N4C
ELECTRON MICROSCOPY
Sample
E. coli RNAP-DNA wrapped open complex
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
Cryogen Name
Sample Vitrification Details
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
16015
Reported Resolution (Å)
17
Resolution Method
FSC 1/2 BIT CUT-OFF
Other Details
?
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
?
Refinement Protocol
OTHER
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
Initial fiting was done using manual fitting in Chimera. Yasara software was used for energy minimizaton of the DNA and RNAP coordinates model.
Data Acquisition
Detector Type
TVIPS TEMCAM-F416 (4k x 4k)
Electron Dose (electrons/Å
2
)
20
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
JEOL 2100
Minimum Defocus (nm)
?
Maximum Defocus (nm)
?
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
?
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
?
Nominal Magnification
?
Calibrated Magnification
?
Source
LAB6
Acceleration Voltage (kV)
200
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
CTF CORRECTION
IMAGIC
?
MODEL FITTING
UCSF Chimera
?
INITIAL EULER ASSIGNMENT
IMAGIC
?
FINAL EULER ASSIGNMENT
IMAGIC
?
CLASSIFICATION
IMAGIC
?
RECONSTRUCTION
IMAGIC
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
PHASE FLIPPING ONLY
?
