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Organism Classification
Alphafold Collection
Indian Data
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Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
6MZV
ELECTRON MICROSCOPY
Sample
Bacterial microcompartment shell from Haliangium ochraceum
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE
Sample Vitrification Details
5-7 sec incubation of the sample on the grid before blotting and plunging
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
149628
Reported Resolution (Å)
3.4
Resolution Method
FSC 0.143 CUT-OFF
Other Details
The selected particle subset was refined without masking and subsequently masked to reveal only the subregion of the BMC shell to which the focused classification had been applied.
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
OTHER
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
?
Data Acquisition
Detector Type
GATAN K2 SUMMIT (4k x 4k)
Electron Dose (electrons/Å
2
)
25
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
FEI TITAN
Minimum Defocus (nm)
?
Maximum Defocus (nm)
?
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2.7
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER
Nominal Magnification
?
Calibrated Magnification
48543
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
PARTICLE SELECTION
RELION
1.4
IMAGE ACQUISITION
Leginon
?
CTF CORRECTION
CTFFIND
4
MODEL FITTING
Coot
?
INITIAL EULER ASSIGNMENT
RELION
1.4
FINAL EULER ASSIGNMENT
RELION
1.4
CLASSIFICATION
RELION
1.4
RECONSTRUCTION
RELION
1.4
MODEL REFINEMENT
PHENIX
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION
Initial CTF fitting using CTFFIND4, CTF correction applied within RELION.