Home
About
Browse
Covid-19
Organism Classification
Alphafold Collection
Indian Data
Contact
Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
5XI1
pdb_00005xi1
10.2210/pdb5xi1/pdb
Download file
FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Ionic Strength
Solvent
pH
Pressure
Temprature (K)
1
2D NOESY
1.54 mM RNA (5'-R(P*CP*CP*GP*CP*AP*GP*CP*GP*G)-3'), 3.08 mM MYC, 90% H2O/10% D2O
10
90% H2O/10% D2O
7.2
760
300
2
2D 1H-13C HSQC
1.54 mM RNA (5'-R(P*CP*CP*GP*CP*AP*GP*CP*GP*G)-3'), 3.08 mM MYC, 90% H2O/10% D2O
10
90% H2O/10% D2O
7.2
760
300
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
AVANCE III
500
NMR Refinement
Method
Details
Software
simulated annealing
9 intermolecular restrainst
2
NMR Ensemble Information
Conformer Selection Criteria
structures with the lowest energy
Conformers Calculated Total Number
100
Conformers Submitted Total Number
10
Representative Model
1 (lowest energy)
Computation: NMR Software
#
Classification
Version
Software Name
Author
1
chemical shift assignment
3.1
TopSpin
Bruker Biospin
2
refinement
?
Discover
Accelrys Software Inc.
3
processing
?
TopSpin
Bruker Biospin
4
processing
?
Sparky
Goddard