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Organism Classification
Alphafold Collection
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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
5WRX
pdb_00005wrx
10.2210/pdb5wrx/pdb
Download file
FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Ionic Strength
Solvent
pH
Pressure
Temprature (K)
1
2D homonuclear TOCSY
1 mM Peptide VG13P, 0.1 mM TSP, 0.02 mM LPS, 55.5 M Water, 56.5 M D2O, 90% H2O/10% D2O
0
90% H2O/10% D2O
4.5
1
298
2
2D trNOESY
1 mM Peptide VG13P, 0.1 mM TSP, 0.02 mM LPS, 55.5 M Water, 56.5 M D2O, 90% H2O/10% D2O
0
90% H2O/10% D2O
4.5
1
298
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
AVANCE III
500
NMR Refinement
Method
Details
Software
simulated annealing
Violated NOE distance constraints were corrected at each refinement step
1
NMR Ensemble Information
Conformer Selection Criteria
structures with the lowest energy
Conformers Calculated Total Number
100
Conformers Submitted Total Number
20
Representative Model
1 (lowest energy)
Computation: NMR Software
#
Classification
Version
Software Name
Author
1
refinement
2.1
CYANA
Guntert, Mumenthaler and Wuthrich
2
processing
3.1
TopSpin
Bruker Biospin
3
chemical shift assignment
3.114
Sparky
Goddard