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Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
5KC2
pdb_00005kc2
10.2210/pdb5kc2/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
Vps15/34
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
Cryogen Name
Sample Vitrification Details
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
14172
Reported Resolution (Å)
28
Resolution Method
FSC 0.5 CUT-OFF
Other Details
?
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector Type
GATAN ULTRASCAN 4000 (4k x 4k)
Electron Dose (electrons/Å
2
)
20
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
FEI POLARA 300
Minimum Defocus (nm)
1000
Maximum Defocus (nm)
1500
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
?
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
OTHER
Nominal Magnification
?
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
120
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
PARTICLE SELECTION
EMAN
2
CTF CORRECTION
EMAN
2
INITIAL EULER ASSIGNMENT
SPIDER
?
FINAL EULER ASSIGNMENT
SPIDER
?
CLASSIFICATION
IMAGIC
?
RECONSTRUCTION
SPIDER
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
PHASE FLIPPING ONLY
?