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Organism Classification
Alphafold Collection
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Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
5FT2
ELECTRON MICROSCOPY
Sample
PURIFIED LASSA VIRUS VLPS AT PH 5
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
GATAN CRYOPLUNGE 3
Cryogen Name
ETHANE-PROPANE
Sample Vitrification Details
VITRIFICATION 1 -- CRYOGEN- ETHANE-PROPANE MIXTURE, HUMIDITY- 80, TEMPERATURE- 120, INSTRUMENT- GATAN CRYOPLUNGE 3, METHOD- BLOT FOR 3 SECONDS BEFORE PLUNGING.,
3D Reconstruction
Reconstruction Method
TOMOGRAPHY
Number of Particles
2578
Reported Resolution (Å)
16.4
Resolution Method
?
Other Details
SUB-TOMOGRAM AVERAGING SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-3292. (DEPOSITION ID: 14158).
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
Cross-correlation coefficient
Overall B Value
?
Fitting Procedure
?
Details
METHOD--RIGID BODY REFINEMENT PROTOCOL--X-RAY
Data Acquisition
Detector Type
GATAN K2 SUMMIT (4k x 4k)
Electron Dose (electrons/Å
2
)
60
Imaging Experiment
Date of Experiment
2014-09-25
Temprature (Kelvin)
Microscope Model
FEI TECNAI F30
Minimum Defocus (nm)
2800
Maximum Defocus (nm)
6700
Minimum Tilt Angle (degrees)
-45
Maximum Tilt Angle (degrees)
45
Nominal CS
2.0
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
.
Nominal Magnification
160000
Calibrated Magnification
37037
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
SUPER-RESOLUTION COUNTING MODE
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
UCSF Chimera
?
RECONSTRUCTION
Dynamo
?
RECONSTRUCTION
IMOD
?
MODEL FITTING
UCSF Chimera
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
?
EACH TILTED IMAGE