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PDB Id
Uniprot Id
Source Organism
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Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
5FJ7
pdb_00005fj7
10.2210/pdb5fj7/pdb
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Validation File (XML)
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ELECTRON MICROSCOPY
Sample
BACTERIOPHAGE PHI6 POLYMERASE COMPLEX ASSEMBLED IN VITRO
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE
Sample Vitrification Details
VITRIFICATION 1 -- CRYOGEN- ETHANE, TEMPERATURE- 120, INSTRUMENT- FEI VITROBOT MARK IV, METHOD- BLOT 4 SECONDS BEFORE PLUNGING,
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
43216
Reported Resolution (Å)
7.9
Resolution Method
?
Other Details
SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-3187. (DEPOSITION ID: 13864).
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
OTHER
Refinement Target
Cross-correlation coefficient
Overall B Value
?
Fitting Procedure
?
Details
METHOD--LOCAL CORRELATION REFINEMENT PROTOCOL--X-RAY
Data Acquisition
Detector Type
GATAN K2 (4k x 4k)
Electron Dose (electrons/Å
2
)
0.16
Imaging Experiment
Date of Experiment
2014-06-12
Temprature (Kelvin)
Microscope Model
FEI TECNAI F30
Minimum Defocus (nm)
1100
Maximum Defocus (nm)
2600
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2.0
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
.
Nominal Magnification
160000
Calibrated Magnification
37037
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
DOSE RATE 6-8 E- PER PIX PER S
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
Coot
?
MODEL FITTING
PHENIX
?
MODEL FITTING
UCSF Chimera
?
RECONSTRUCTION
RELION
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
?
EACH PARTICLE