X-RAY DIFFRACTION

Crystallization Details
Method pH Temprature Details
X-RAY DIFFRACTION 7.0 293 Racemic DNA solution*, sodium cacodylate, magnesium chloride, sodium chloride, spermine tetrahydrochloride, MPD *For crystallization, we used four strands (1) d(CGCTATAATGCG) with L-sugars (2) d(CGCATTATAGCG) with L-sugars and (3) d(CGCTATAATGCG) with D-sugars (4) d(CGCATTATAGCG) with D-sugars Enantio-pure L-DNA solution (strands 1,2) and D-DNA solution (strands 3,4) were prepared first with denaturation followed by slow annealing process to ensure proper folding of the duplex formed between the non-self complementary strands. After annealing, the enantiopure solutions were mixed in equimolar ratio and this racemic mixture was used for crystallization.
Unit Cell:
a: 28.905 Å b: 68.454 Å c: 34.211 Å α: 90.00° β: 90.00° γ: 90.00°
Symmetry:
Space Group: P n n a
Crystal Properties:
Matthew's Coefficient: 2.32 Solvent Content: 64
Refinement Statistics
Diffraction ID Structure Solution Method Cross Validation Method Resolution Limit (High) Resolution Limit (Low) Number of Reflections (Observed) Number of Reflections (R-free) Percent Reflections (Observed) R-Work R-Free Mean Isotropic
X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.30 34.23 2678 147 96.58 0.27591 0.35745 37.461
Data Collection
Overall
Resolution Limit (High) Resolution Limit (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.30 34.23 96.61 0.045 ? 8.87 1.8 ? 2825 ? ? ?
Highest Resolution Shell
# Resolution Limits (Low) Resolution Limits (High) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1 2.30 2.38 78.57 ? ? 1.34 1.6 ?
Diffraction
Diffraction experiment
Crystal ID Scattering Type Data Collection Temprature Detector Detector Type Details Collection Date Monochromator Protocol
1 150 K ?
Radiation Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU FR-X 1.54 ? ?
Software
Software Name Purpose Version
REFMAC refinement 5.8.0073
XDS data reduction .
XDS data scaling .
PHASER phasing .