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Organism Classification
Alphafold Collection
Virus Classification
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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
5A8F
pdb_00005a8f
10.2210/pdb5a8f/pdb
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FASTA
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MMCIF
Binary MMCIF
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Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
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ELECTRON MICROSCOPY
Sample
A PARTICLE OF SAFFOLD VIRUS-3
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE
Sample Vitrification Details
CRYOGEN - LIQUID ETHANE, VITROBOT MARK IV, BLOT FOR 2 SECONDS
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
14028
Reported Resolution (Å)
10.6
Resolution Method
?
Other Details
SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-3097. (DEPOSITION ID: 13604).
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
OTHER
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
METHOD--LOCAL CORRELATION
Data Acquisition
Detector Type
FEI EAGLE (4k x 4k)
Electron Dose (electrons/Å
2
)
20
Imaging Experiment
Date of Experiment
2014-09-03
Temprature (Kelvin)
Microscope Model
FEI TECNAI F20
Minimum Defocus (nm)
2330
Maximum Defocus (nm)
3950
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
0
Nominal CS
2
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
.
Nominal Magnification
55000
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
200
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
INITIAL EULER ASSIGNMENT
JALIGN
?
RECONSTRUCTION
Bsoft
?
RECONSTRUCTION
EMAN
2
RECONSTRUCTION
J3DR
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
?
EACH PARTICLE