ELECTRON MICROSCOPY


Sample

VESICULAR STOMATITIS VIRUS RNA- DEPENDENT RNA POLYMERASE (L) BOUND TO PHOSPHOPROTEIN P FRAGMENT

Specimen Preperation
Sample Aggregation State PARTICLE
Vitrification Instrument FEI VITROBOT MARK I
Cryogen Name ETHANE
Sample Vitrification Details LIQUID ETHANE
3D Reconstruction
Reconstruction Method SINGLE PARTICLE
Number of Particles 74940
Reported Resolution (Å) 3.80
Resolution Method ?
Other Details FREALIGN WAS USED FOR REFINEMENT AND THREE- DIMENSIONAL CLASSIFICATION. SEGMENTS A1159-A1171, A1210-A1226, A1308-1334, A1387-A1395, A1512-A1516, A1534-A1541 ARE IN POOR DENSITY, AND THE CHAIN TRACE IN THOSE REGIONS IS APPROXIMATE. STEREOCHEMISTRY OF ZN A3000, A3001 COORDINATION IS POOR. DEPOSITED STRUCTURE FACTORS USED FOR REFINEMENT OF THIS ENTRY ARE FROM SOLVENT FLATTENED EM MAP EMD CODE 6337 AFTER PLACING THE DENSITY INTO A CELL WITH DIMESIONS 112.000, 143.000, 106.000 AND ANGLES 90.00,90.00,90.00. APPLY THE FOLLOWING TRANSFORMATION MATRIX TO THE COORDINATES IN ORDER TO PLACE THE MODEL INTO THE DENSITY CALCULATED FROM THE DEPOSITED STRUCTURE FACTORS: MODEL2SF 1 -0.492787 0.222962 -0.841098 139.886 MODEL2SF 1 -0.456450 -0.889187 0.031721 169.772 MODEL2SF 1 -0.740818 0.399552 0.539950 33.800
Refinement Type
Symmetry Type POINT
Map-Model Fitting and Refinement
ID 1
Refinement Space RECIPROCAL
Refinement Protocol FLEXIBLE FIT
Refinement Target Maximum likelihood
Overall B Value ?
Fitting Procedure ?
Details METHOD--PHENIX.REFINE
Data Acquisition
Detector Type GATAN K2 (4k x 4k)
Electron Dose (electrons/Å2) 100
Imaging Experiment
Date of Experiment 2014-08-01
Temprature (Kelvin)
Microscope Model FEI TECNAI F20
Minimum Defocus (nm) 900
Maximum Defocus (nm) 2300
Minimum Tilt Angle (degrees) ?
Maximum Tilt Angle (degrees) ?
Nominal CS 2.0
Imaging Mode OTHER
Specimen Holder Model .
Nominal Magnification 29000
Calibrated Magnification 40410
Source FIELD EMISSION GUN
Acceleration Voltage (kV) 200
Imaging Details GOOD MICROGRAPHS WERE SELECTED FOR DIGITISATION
Imaging Experiment
Task Software Package Version
RECONSTRUCTION EMAN 2
RECONSTRUCTION FREALIGN ?
RECONSTRUCTION IMAGIC ?
Image Processing
CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details
? INDIVIDUAL PARTICLES