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PDB Id
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Source Organism
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Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
4V8T
pdb_00004v8t
10.2210/pdb4v8t/pdb
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Structure Factors
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Validation File (XML)
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ELECTRON MICROSCOPY
Sample
60S RIBOSOMAL SUBUNIT IN COMPLEX WITH ARX1 AND REI1
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
HOMEMADE PLUNGER
Cryogen Name
ETHANE
Sample Vitrification Details
PLUNGE FREEZING IN LIQUID ETHANE AFTER MANUAL BLOTTING USING A MANUAL PLUNGE FREEZING DEVICE
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
84113
Reported Resolution (Å)
8.1
Resolution Method
?
Other Details
SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-2169. (DEPOSITION ID: 10977).
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
Cross-correlation coefficient
Overall B Value
?
Fitting Procedure
?
Details
METHOD--RIGID BODY REFINEMENT PROTOCOL--RIGID BODY
Data Acquisition
Detector Type
GATAN ULTRASCAN 4000 (4k x 4k)
Electron Dose (electrons/Å
2
)
20
Imaging Experiment
Date of Experiment
2012-02-21
Temprature (Kelvin)
Microscope Model
FEI TECNAI 20
Minimum Defocus (nm)
1500
Maximum Defocus (nm)
4500
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
0
Nominal CS
2.3
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
.
Nominal Magnification
83000
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
200
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
UCSF Chimera
?
RECONSTRUCTION
SPIDER
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
.
PER FRAME
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