Home
About
Browse
Covid-19
Organism Classification
Alphafold Collection
Virus Classification
Indian Data
Contact
Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
4V7Q
pdb_00004v7q
10.2210/pdb4v7q/pdb
Download file
FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
Rotavirus Triple Layered Particle
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
HOMEMADE PLUNGER
Cryogen Name
ETHANE
Sample Vitrification Details
in normal coldroom environment, ETHANE, manual plunger, front blotting for 3s before plunging, temperature 90 K
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
4187
Reported Resolution (Å)
3.8
Resolution Method
?
Other Details
icosahedral (I2) averaging
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector Type
KODAK SO-163 FILM
Electron Dose (electrons/Å
2
)
20
Imaging Experiment
Date of Experiment
2008-03-01
Temprature (Kelvin)
Microscope Model
FEI TECNAI F30
Minimum Defocus (nm)
1200
Maximum Defocus (nm)
3000
Minimum Tilt Angle (degrees)
0
Maximum Tilt Angle (degrees)
0
Nominal CS
2
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
?
Nominal Magnification
59000
Calibrated Magnification
56772
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
Cut-plate film holders to reduce electron back-scattering
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
.
individual particle