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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
4V7I
pdb_00004v7i
10.2210/pdb4v7i/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
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Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
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ELECTRON MICROSCOPY
Sample
RIBOSOME-SECY COMPLEX
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
HOMEMADE PLUNGER
Cryogen Name
ETHANE
Sample Vitrification Details
THE SPECIMENS WERE PLUNGE FROZEN IN LIQUID ETHANE AT 4 DEGREES C AT AN RH OF ~90-95%.
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
39000
Reported Resolution (Å)
9.600
Resolution Method
?
Other Details
EMAN
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
FLEXIBLE FIT
Refinement Target
RMSD CONVERGENCE
Overall B Value
?
Fitting Procedure
?
Details
METHOD--MOLECULAR DYNAMICS FLEXIBLE FITTING REFINEMENT PROTOCOL--FLEXIBLE
Data Acquisition
Detector Type
KODAK SO-163 FILM
Electron Dose (electrons/Å
2
)
15
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
FEI TECNAI F20
Minimum Defocus (nm)
-700.00
Maximum Defocus (nm)
-3000.00
Minimum Tilt Angle (degrees)
0.00
Maximum Tilt Angle (degrees)
0.00
Nominal CS
2.00
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
.
Nominal Magnification
50000
Calibrated Magnification
51000
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
200
Imaging Details
GATAN DH626 COLD HOLDER
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
NAMD
2.7B1
RECONSTRUCTION
EMAN
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
.
EMAN- PHASE FLIPPING OF PARTICLES FORM THE SAME MICROGRAPH