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Alphafold Collection
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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
4V7B
pdb_00004v7b
10.2210/pdb4v7b/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
ribosomal 70S-EF-G complex
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK I
Cryogen Name
ETHANE
Sample Vitrification Details
Blot for 5-10 seconds before plunging into liquid ethane (FEI VITROBOT MARK I)
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
279309
Reported Resolution (Å)
6.800
Resolution Method
FSC 0.5 CUT-OFF
Other Details
(Single particle--Applied symmetry: C1)
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
REFINEMENT PROTOCOL--rigid body
Data Acquisition
Detector Type
KODAK SO-163 FILM
Electron Dose (electrons/Å
2
)
20.00
Imaging Experiment
Date of Experiment
2010-06-14
Temprature (Kelvin)
Microscope Model
FEI POLARA 300
Minimum Defocus (nm)
2000
Maximum Defocus (nm)
5000
Minimum Tilt Angle (degrees)
0.0
Maximum Tilt Angle (degrees)
0.0
Nominal CS
?
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
GATAN HELIUM
Nominal Magnification
39000
Calibrated Magnification
39000
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
UCSF Chimera
?
RECONSTRUCTION
SPIDER
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
.
The volumes were CTF-corrected in defocus groups with an average of approximately 906 individual images per group.