ELECTRON MICROSCOPY

Sample

HUMAN ADENOVIRUS TYPE 5

Specimen Preperation
Sample Aggregation State PARTICLE
Vitrification Instrument ZEISS PLUNGE FREEZER CRYOBOX
Cryogen Name ETHANE
Sample Vitrification Details LIQUID ETHANE
3D Reconstruction
Reconstruction Method SINGLE PARTICLE
Number of Particles 4100
Reported Resolution (Å) 10.0
Resolution Method ?
Other Details THE NUMBER OF ATOMS IN THIS STRUCTURE EXCEEDS THE MAXIMUM ALLOWED BY THE PDB FORMAT. IT HAS THEREFORE BEEN SPLIT ACROSS TWO PDB ENTRIES: 2BLD CONTAINS THE PENTON BASE, 2BVI CONTAINS THE FOUR UNIQUE COPIES OF THE HEXON. THE COMPLETE CAPSID CAN BE GENERATED BY APPLYING ICOSAHEDRAL SYMMETRY OPERATORS TO THE COORDINATES IN THE TWO ENTRIES AND THEN COMBINING THE RESULTING CAPSID FRAGMENTS. THE PENTON BASE COMPRISES CHAINS A,B,C,D,E,S,T,U,V AND W AND MUST BE TRANSFORMED BY 12 SPECIFIC MATRICES DEFINED IN REMARK 350. THE HEXONS COMPRISE CHAINS F,G,H,I,J,K,L M,N,O,P AND Q AND MUST BE TRANSFORMED BY ALL ICOSAHEDRAL OPERATORS.
Refinement Type
Symmetry Type POINT
Map-Model Fitting and Refinement
ID 1
Refinement Space RECIPROCAL
Refinement Protocol RIGID BODY FIT
Refinement Target R-FACTOR, CORRELATION COEFFICIENT
Overall B Value ?
Fitting Procedure ?
Details METHOD--RIGID BODY REFINEMENT PROTOCOL--X-RAY
Data Acquisition
Detector Type KODAK SO-163 FILM
Electron Dose (electrons/Å2) 10
Imaging Experiment
Date of Experiment 2003-10-01
Temprature (Kelvin)
Microscope Model FEI/PHILIPS CM200T
Minimum Defocus (nm) 100
Maximum Defocus (nm) 250
Minimum Tilt Angle (degrees) 0
Maximum Tilt Angle (degrees) 0
Nominal CS 2
Imaging Mode BRIGHT FIELD
Specimen Holder Model .
Nominal Magnification 27500
Calibrated Magnification 28600
Source LAB6
Acceleration Voltage (kV) 200
Imaging Details ?
Imaging Experiment
Task Software Package Version
CTF CORRECTION CTFMIX ?
MODEL FITTING Situs ?
MODEL FITTING URO ?
PARTICLE SELECTION X3D ?
RECONSTRUCTION EM3DR ?
RECONSTRUCTION PFT 2
RECONSTRUCTION SPIDER ?
Image Processing
CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details
? AMPLITUDE, PHASE TMV AND COMPARISON WITH X-RAY DATA