Home
About
Browse
Covid-19
Organism Classification
Alphafold Collection
Indian Data
Contact
Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
4UQK
ELECTRON MICROSCOPY
Sample
GLU A2 ATD AND GLUA2 LBD
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE
Sample Vitrification Details
ETHANE
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
4795
Reported Resolution (Å)
16.4
Resolution Method
?
Other Details
FOUR ASSEMBLIES CONSISTING OF TWO ATD DIMERS FROM PDB 3KG2 AND TWO LBD DIMERS FROM PDB 1MM7 WERE FIT AS INDEPENDENT RIGID BODIES TO EM MAPS GEOMETRY AND STEREOCHEMISTRY OUTLIERS ARE THOSE PRESENT IN THE PDB ENTRIES USED FOR RIGID BODY FITTING SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-2689. (DEPOSITION ID: 12609).
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
METHOD--RIGID BODY REFINEMENT PROTOCOL--RIGID BODY
Data Acquisition
Detector Type
FEI FALCON II (4k x 4k)
Electron Dose (electrons/Å
2
)
25
Imaging Experiment
Date of Experiment
2013-08-01
Temprature (Kelvin)
Microscope Model
FEI TITAN KRIOS
Minimum Defocus (nm)
2000
Maximum Defocus (nm)
3500
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
?
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
.
Nominal Magnification
47000
Calibrated Magnification
47000
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
UCSF Chimera
?
RECONSTRUCTION
RELION
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
?
EACH PARTICLE