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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
4D3E
pdb_00004d3e
10.2210/pdb4d3e/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
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Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
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Binary MMCIF Zipped(.gz)
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Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
WILD-TYPE T3SS NEEDLE COMPLEX
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
Cryogen Name
Sample Vitrification Details
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
2963
Reported Resolution (Å)
24
Resolution Method
?
Other Details
THIS MODEL IS RESULT OF RIGID-BODY TRANSFORMATION OF AN EXISTING PDB MODEL, CONSTRAINED BY A 24 A RESOLUTION EM MAP AND SOME CYSTEINE-MEDIATED CROSSLINKING DATA. THEREFORE, IT DOES NOT SUPPORT ATOMISTIC INTERPRETATIONS BECAUSE OF LACK OF RESOLUTION.
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
OTHER
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
METHOD--SEE PUBLICATION REFINEMENT PROTOCOL--X-RAY
Data Acquisition
Detector Type
FEI EAGLE (4k x 4k)
Electron Dose (electrons/Å
2
)
90
Imaging Experiment
Date of Experiment
2011-08-31
Temprature (Kelvin)
Microscope Model
FEI TECNAI 20
Minimum Defocus (nm)
1200
Maximum Defocus (nm)
1600
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
.
Nominal Magnification
50000
Calibrated Magnification
70754
Source
LAB6
Acceleration Voltage (kV)
200
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
UCSF Chimera
?
RECONSTRUCTION
EMAN
2
RECONSTRUCTION
SPIDER
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
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