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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
4CYL
pdb_00004cyl
10.2210/pdb4cyl/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
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MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
EPITHELIAL FUSION FAILURE 1 (EFF-1) ISOFORM A ON EXTRACELLULAR VESICLES
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
HOMEMADE PLUNGER
Cryogen Name
ETHANE-PROPANE
Sample Vitrification Details
VITRIFICATION 1 -- CRYOGEN- ETHANE-PROPANE MIXTURE, TEMPERATURE- 77, INSTRUMENT- HOMEMADE PLUNGER, METHOD- BLOT FOR 3 SECONDS BEFORE PLUNGING
3D Reconstruction
Reconstruction Method
TOMOGRAPHY
Number of Particles
801
Reported Resolution (Å)
22.2
Resolution Method
?
Other Details
SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-2530. (DEPOSITION ID: 12175).
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
FLEXIBLE FIT
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
METHOD--FLEXIBLE FITTING REFINEMENT PROTOCOL--FLEXIBLE FIT OF X-RAY STRUCTURE
Data Acquisition
Detector Type
GATAN ULTRASCAN 4000 (4k x 4k)
Electron Dose (electrons/Å
2
)
80
Imaging Experiment
Date of Experiment
2013-03-03
Temprature (Kelvin)
Microscope Model
FEI TECNAI F30
Minimum Defocus (nm)
2000
Maximum Defocus (nm)
2500
Minimum Tilt Angle (degrees)
-60
Maximum Tilt Angle (degrees)
60
Nominal CS
2
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
.
Nominal Magnification
95000
Calibrated Magnification
78950
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
200
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
UCSF Chimera
?
RECONSTRUCTION
PEET
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details