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Organism Classification
Alphafold Collection
Indian Data
Contact
Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
4AB3
ELECTRON MICROSCOPY
Sample
GROEL-ATP14 RD5-RDOPEN
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK I
Cryogen Name
ETHANE
Sample Vitrification Details
VITRIFIED WITH A VITROBOT AT 100 PERCENT HUMIDITY WITH 2-3 SECONDS BLOTTING TIME
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
15000
Reported Resolution (Å)
8.5
Resolution Method
?
Other Details
SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD -2003.(DEPOSITION ID: 10412).
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
FLEXIBLE FIT
Refinement Target
Cross-correlation coefficient
Overall B Value
?
Fitting Procedure
?
Details
METHOD--FLEXIBLE FITTING REFINEMENT PROTOCOL--X-RAY
Data Acquisition
Detector Type
GATAN ULTRASCAN 4000 (4k x 4k)
Electron Dose (electrons/Å
2
)
15
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
FEI TECNAI F20
Minimum Defocus (nm)
700
Maximum Defocus (nm)
3500
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
.
Nominal Magnification
?
Calibrated Magnification
148500
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
120
Imaging Details
THE DATA WERE COLLECTED WITH LEGINON AT SCRIPPS
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
Flex-EM
?
MODEL FITTING
NAMD
2.6
MODEL FITTING
UCSF Chimera
?
RECONSTRUCTION
IMAGIC
?
RECONSTRUCTION
SPIDER
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
?
EACH PARTICLE WAS PHASE FLIPPED