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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
4A9G
pdb_00004a9g
10.2210/pdb4a9g/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
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Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
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Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
DEGQ 24-MER BOUND TO BETA- CASEIN
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
HOMEMADE PLUNGER
Cryogen Name
ETHANE
Sample Vitrification Details
LIQUID ETHANE
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
9848
Reported Resolution (Å)
7.50
Resolution Method
?
Other Details
BETA-CASEIN WERE NOT FITTED AS BETA-CASEIN IS AN INTRISICALLY DISORDERED PROTEIN. HOWEVER BETA-CASEIN IS PRESENT IN THE DEGQ 24-MER COMPLEX. SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-1984. (DEPOSITION ID: 10375).
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
FLEXIBLE FIT
Refinement Target
Cross-correlation coefficient
Overall B Value
?
Fitting Procedure
?
Details
METHOD--FLEXIBLE FITTING REFINEMENT PROTOCOL--X-RAY
Data Acquisition
Detector Type
KODAK SO-163 FILM
Electron Dose (electrons/Å
2
)
15
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
FEI TECNAI F20
Minimum Defocus (nm)
1000
Maximum Defocus (nm)
3000
Minimum Tilt Angle (degrees)
-0.5
Maximum Tilt Angle (degrees)
0
Nominal CS
2
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
.
Nominal Magnification
50000
Calibrated Magnification
50000
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
200
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
Flex-EM
?
MODEL FITTING
MODELLER
?
MODEL FITTING
UCSF Chimera
?
RECONSTRUCTION
IMAGIC
?
RECONSTRUCTION
SPIDER
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
?
FULL CTF CORRECTION