Home
About
Browse
Covid-19
Organism Classification
Alphafold Collection
Virus Classification
Indian Data
Contact
Documentation
Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
4A7H
pdb_00004a7h
10.2210/pdb4a7h/pdb
Download file
FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
F-ACTIN-MYO1E-TROPOMYOSIN COMPLEX (CONFORMATION 2)
Specimen Preperation
Sample Aggregation State
FILAMENT
Vitrification Instrument
GATAN CRYOPLUNGE 3
Cryogen Name
ETHANE
Sample Vitrification Details
VITRIFICATION 1 -- CRYOGEN- ETHANE, HUMIDITY- 90, TEMPERATURE- 101, INSTRUMENT- GATAN CRYOPLUNGE 3, METHOD- MANUAL BLOTTING FOR APPROXIMATELY 15 SECONDS,
3D Reconstruction
Reconstruction Method
HELICAL
Number of Particles
9650
Reported Resolution (Å)
7.8
Resolution Method
?
Other Details
SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-1988 (DEPOSITION ID: 10379).
Refinement Type
Symmetry Type
HELICAL
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
FLEXIBLE FIT
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
METHOD--GEOMETRY-BASED CONFORMATIONAL SAMPLING USING DEFORMABLE ELASTIC NETWORK (DEN) APPROACH REFINEMENT PROTOCOL--EM
Data Acquisition
Detector Type
TVIPS TEMCAM-F816 (8k x 8k)
Electron Dose (electrons/Å
2
)
1.7
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
JEOL 3200FSC
Minimum Defocus (nm)
750
Maximum Defocus (nm)
1500
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
4.1
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
.
Nominal Magnification
80000
Calibrated Magnification
169644
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
200
Imaging Details
BEST 836 MICROGRAPHS WERE SELECTED FROM OVER 3000 AQUIRED IMAGES
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
DireX
?
RECONSTRUCTION
SPARX
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
?
EACH PARTICLE
Feedback
Feedback Form
Name
Email
Institute
Feedback
Submit