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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
3JD6
?
?
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FASTA
PDB
MMCIF
Binary MMCIF
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Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
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Binary MMCIF Zipped(.gz)
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Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
Purified Retinoschisin: residues 24-224 + 6xHis
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
LEICA EM GP
Cryogen Name
ETHANE
Sample Vitrification Details
Ambient temperature 23 degrees C. Plunged into liquid ethane (LEICA EM GP).
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
9096
Reported Resolution (Å)
4.1
Resolution Method
FSC 0.143 CUT-OFF
Other Details
?
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
FLEXIBLE FIT
Refinement Target
FSC(0.5) = 4.7
Overall B Value
?
Fitting Procedure
?
Details
METHOD--Flexible fitting REFINEMENT PROTOCOL--FLEXIBLE
Data Acquisition
Detector Type
GATAN K2 (4k x 4k)
Electron Dose (electrons/Å
2
)
30
Imaging Experiment
Date of Experiment
2014-06-03
Temprature (Kelvin)
Microscope Model
FEI POLARA 300
Minimum Defocus (nm)
?
Maximum Defocus (nm)
?
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2.0
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
OTHER
Nominal Magnification
39000
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
10 frames over 3 seconds
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
Coot
?
MODEL FITTING
Foldit
?
MODEL FITTING
MDFF
?
RECONSTRUCTION
EMAN
2
RECONSTRUCTION
RELION
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
.
Included in iterative refinement