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Organism Classification
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Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
3JCG
ELECTRON MICROSCOPY
Sample
CorA from Thermotoga maritima in the absence of magnesium, state I
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
LEICA EM GP
Cryogen Name
ETHANE
Sample Vitrification Details
Grids were blotted at 4 degrees Celsius for 7 seconds after a 10-second pre-blotting period, then plunge-frozen in liquid ethane.
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
26271
Reported Resolution (Å)
7.06
Resolution Method
FSC 0.143 CUT-OFF
Other Details
Final maps were calculated from two merged datasets. (Single particle details: The particles were selected using an automatic selection program. 3D classification, 3D refinement, and postprocessing were done using RELION 1.3.) (Single particle--Applied symmetry: C1)
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
?
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
?
Data Acquisition
Detector Type
GATAN K2 QUANTUM (4k x 4k)
Electron Dose (electrons/Å
2
)
40
Imaging Experiment
Date of Experiment
2014-10-15
Temprature (Kelvin)
Microscope Model
FEI TITAN KRIOS
Minimum Defocus (nm)
890
Maximum Defocus (nm)
2700
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2.7
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification
105000
Calibrated Magnification
105000
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
Parallel beam illumination
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
Coot
?
MODEL FITTING
PHENIX
?
MODEL FITTING
UCSF Chimera
?
RECONSTRUCTION
RELION
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
.
CTF parameters obtained from whole micrograph