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Alphafold Collection
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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
3J9R
?
?
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FASTA
PDB
MMCIF
Binary MMCIF
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Structure Factors
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Validation File (XML)
Validation File (CIF)
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ELECTRON MICROSCOPY
Sample
Pyocin (post-contraction) sheath
Specimen Preperation
Sample Aggregation State
FILAMENT
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE
Sample Vitrification Details
Blot for 4 seconds (blot force 1) before plunging into liquid ethane (FEI VITROBOT MARK IV).
3D Reconstruction
Reconstruction Method
HELICAL
Number of Particles
?
Reported Resolution (Å)
3.9
Resolution Method
OTHER
Other Details
Model-Map FSC (Helical Details: Relion-based IHRSR)
Refinement Type
Symmetry Type
HELICAL
Map-Model Fitting and Refinement
ID
1
Refinement Space
?
Refinement Protocol
?
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
?
Data Acquisition
Detector Type
KODAK SO-163 FILM
Electron Dose (electrons/Å
2
)
25
Imaging Experiment
Date of Experiment
2009-10-07
Temprature (Kelvin)
Microscope Model
FEI TITAN KRIOS
Minimum Defocus (nm)
1600
Maximum Defocus (nm)
2500
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2.7
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification
59000
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
Scanned with 9200 ED
Imaging Experiment
Task
Software Package
Version
RECONSTRUCTION
IHRSR
?
RECONSTRUCTION
RELION
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
.
Each particle