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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
3J8A
?
?
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FASTA
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MMCIF
Binary MMCIF
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Structure Factors
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Validation File (XML)
Validation File (CIF)
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Binary MMCIF Zipped(.gz)
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Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
F-actin-tropomyosin complex
Specimen Preperation
Sample Aggregation State
FILAMENT
Vitrification Instrument
GATAN CRYOPLUNGE 3
Cryogen Name
ETHANE
Sample Vitrification Details
Sample was applied to grid, incubated for 10 seconds, and manually blotted for 3 seconds from the backside with filter paper before plunging into liquid ethane (GATAN CRYOPLUNGE 3)
3D Reconstruction
Reconstruction Method
HELICAL
Number of Particles
?
Reported Resolution (Å)
3.7
Resolution Method
FSC 0.5 CUT-OFF
Other Details
The tropomyosin map filtered to 6.5 Angstrom was merged with the final F-actin map (3.7 Angstrom) to obtain a map of the entire F-actin tropomyosin complex. Coordinates must be shifted by (0.123 -0.381 0.273) to match coordinates to fibre diffraction standards (filament axis = z axis passing through x=0 and y=0).
Refinement Type
Symmetry Type
HELICAL
Map-Model Fitting and Refinement
ID
1
Refinement Space
?
Refinement Protocol
FLEXIBLE FIT
Refinement Target
R-factor
Overall B Value
55.4
Fitting Procedure
?
Details
METHOD--maximum likelihood, flexible fitting
Data Acquisition
Detector Type
FEI FALCON II (4k x 4k)
Electron Dose (electrons/Å
2
)
14.6
Imaging Experiment
Date of Experiment
2013-10-17
Temprature (Kelvin)
Microscope Model
FEI TITAN KRIOS
Minimum Defocus (nm)
800
Maximum Defocus (nm)
2600
Minimum Tilt Angle (degrees)
0.0
Maximum Tilt Angle (degrees)
0.0
Nominal CS
0
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification
59000
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
Cs-corrected microscope
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
Coot
?
MODEL FITTING
DireX
?
MODEL FITTING
PHENIX
?
RECONSTRUCTION
SPARX
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
.
each micrograph