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Organism Classification
Alphafold Collection
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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
3J7A
pdb_00003j7a
10.2210/pdb3j7a/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE
Sample Vitrification Details
Blot 2.5 seconds before plunging into liquid ethane (FEI VITROBOT MARK IV).
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
105247
Reported Resolution (Å)
3.2
Resolution Method
FSC 0.143 CUT-OFF
Other Details
A newly developed statistical movie processing approach was used to compensate for beam-induced movement.
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector Type
FEI FALCON II (4k x 4k)
Electron Dose (electrons/Å
2
)
20
Imaging Experiment
Date of Experiment
2014-01-19
Temprature (Kelvin)
Microscope Model
FEI POLARA 300
Minimum Defocus (nm)
800
Maximum Defocus (nm)
3800
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2.0
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
?
Nominal Magnification
78000
Calibrated Magnification
104748
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
CTF CORRECTION
CTFFIND
3
RECONSTRUCTION
RELION
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
.
Each particle