ELECTRON MICROSCOPY

Sample

Human Papilloma Virus type 16 capsid

Specimen Preperation
Sample Aggregation State PARTICLE
Vitrification Instrument LEICA KF80
Cryogen Name ETHANE
Sample Vitrification Details Plunged into liquid ethane (LEICA KF80)
3D Reconstruction
Reconstruction Method SINGLE PARTICLE
Number of Particles 5952
Reported Resolution (Å) 9.1
Resolution Method FSC 0.33 CUT-OFF
Other Details (Single particle--Applied symmetry: I)
Refinement Type
Symmetry Type POINT
Map-Model Fitting and Refinement
ID 1
Refinement Space REAL
Refinement Protocol FLEXIBLE FIT
Refinement Target ?
Overall B Value ?
Fitting Procedure ?
Details REFINEMENT PROTOCOL--flexible DETAILS--Rigid fitting of domain copies in asymmetric unit, followed by molecular dynamics-based flexible fitting, adding symmetry as constraint
Data Acquisition
Detector Type KODAK SO-163 FILM
Electron Dose (electrons/Å2) .
Imaging Experiment
Date of Experiment 2010-02-02
Temprature (Kelvin)
Microscope Model FEI/PHILIPS CM200FEG
Minimum Defocus (nm) 537
Maximum Defocus (nm) 2175
Minimum Tilt Angle (degrees) 0.0
Maximum Tilt Angle (degrees) 0.0
Nominal CS 2
Imaging Mode BRIGHT FIELD
Specimen Holder Model GATAN LIQUID NITROGEN
Nominal Magnification 38000
Calibrated Magnification ?
Source FIELD EMISSION GUN
Acceleration Voltage (kV) 120
Imaging Details ?
Imaging Experiment
Task Software Package Version
MODEL FITTING MDFF ?
MODEL FITTING NAMD ?
MODEL FITTING PyMOL ?
MODEL FITTING UCSF Chimera ?
MODEL FITTING VMD ?
RECONSTRUCTION Auto3DEM ?
RECONSTRUCTION Bsoft ?
Image Processing
CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details
. each micrograph
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