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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
3J6J
pdb_00003j6j
10.2210/pdb3j6j/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
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Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
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MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
MAVS filament
Specimen Preperation
Sample Aggregation State
FILAMENT
Vitrification Instrument
FEI VITROBOT MARK I
Cryogen Name
NITROGEN
Sample Vitrification Details
Plunged in liquid nitrogen (FEI VITROBOT MARK I)
3D Reconstruction
Reconstruction Method
HELICAL
Number of Particles
?
Reported Resolution (Å)
3.64
Resolution Method
FSC 0.5 CUT-OFF
Other Details
The electron density map of the filament was reconstructed using a helical geometrically constrained reconstruction approach (Helicon).
Refinement Type
Symmetry Type
HELICAL
Map-Model Fitting and Refinement
ID
1
Refinement Space
RECIPROCAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
Cross-correlation coefficient
Overall B Value
136.08
Fitting Procedure
?
Details
METHOD--local refinement REFINEMENT PROTOCOL--rigid body with TLS
Data Acquisition
Detector Type
GATAN K2 (4k x 4k)
Electron Dose (electrons/Å
2
)
31
Imaging Experiment
Date of Experiment
2013-08-10
Temprature (Kelvin)
Microscope Model
FEI TECNAI F20
Minimum Defocus (nm)
?
Maximum Defocus (nm)
?
Minimum Tilt Angle (degrees)
0.0
Maximum Tilt Angle (degrees)
0.0
Nominal CS
?
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
GATAN LIQUID NITROGEN
Nominal Magnification
29000
Calibrated Magnification
40410
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
200
Imaging Details
Movies were recorded at liquid nitrogen temperature with a K2 Summit direct detector device camera operated in super-resolution mode with dose-fractionation.
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
PHENIX
?
RECONSTRUCTION
Helicon
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details