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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
3J5V
pdb_00003j5v
10.2210/pdb3j5v/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
PhuZ filament
Specimen Preperation
Sample Aggregation State
FILAMENT
Vitrification Instrument
FEI VITROBOT MARK III
Cryogen Name
ETHANE
Sample Vitrification Details
Blotted 2 seconds before plunging in liquid ethane (FEI VITROBOT MARK III)
3D Reconstruction
Reconstruction Method
HELICAL
Number of Particles
23243
Reported Resolution (Å)
7.1
Resolution Method
?
Other Details
A modified version of SPIDER program was used for the reconstruction. Helical symmetry search was performed with hsearch_lorentz.
Refinement Type
Symmetry Type
HELICAL
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
FLEXIBLE FIT
Refinement Target
cross-correlation
Overall B Value
?
Fitting Procedure
?
Details
METHOD--Flexible fitting DETAILS--Flexible fitting applied to C-terminus (residues 273-315)
Data Acquisition
Detector Type
TVIPS TEMCAM-F816 (8k x 8k)
Electron Dose (electrons/Å
2
)
25
Imaging Experiment
Date of Experiment
2011-11-21
Temprature (Kelvin)
Microscope Model
FEI TECNAI F20
Minimum Defocus (nm)
700
Maximum Defocus (nm)
2500
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2.2
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
?
Nominal Magnification
62000
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
200
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
Coot
?
MODEL FITTING
UCSF Chimera
?
RECONSTRUCTION
SPIDER
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
.
Whole micrograph
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