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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
3J2U
pdb_00003j2u
10.2210/pdb3j2u/pdb
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FASTA
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Binary MMCIF
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Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
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Binary MMCIF Zipped(.gz)
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Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
kinesin-13 KLP10A head domain in complex with CS-tubulin and a microtubule
Specimen Preperation
Sample Aggregation State
FILAMENT
Vitrification Instrument
FEI VITROBOT MARK I
Cryogen Name
ETHANE
Sample Vitrification Details
?
3D Reconstruction
Reconstruction Method
HELICAL
Number of Particles
54584
Reported Resolution (Å)
10.8
Resolution Method
FSC 0.143 CUT-OFF
Other Details
?
Refinement Type
Symmetry Type
HELICAL
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
REFINEMENT PROTOCOL--RIGID BODY DETAILS--The domains were separately fitted with the global fitting option of the routine fitmap within UCSF-Chimera. Best fit was chosen based on the maximum cross-correlation value between the EM density and an 11 A resolution density model of the atomic structure of the domain to be fitted.
Data Acquisition
Detector Type
.
Electron Dose (electrons/Å
2
)
.
Imaging Experiment
Date of Experiment
2012-05-01
Temprature (Kelvin)
Microscope Model
JEOL 3200FSC
Minimum Defocus (nm)
?
Maximum Defocus (nm)
?
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
?
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
JEOL
Nominal Magnification
?
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
CTF CORRECTION
CTFFIND
3
MODEL FITTING
UCSF Chimera
?
RECONSTRUCTION
Custom
?
RECONSTRUCTION
IHRSR
?
RECONSTRUCTION
SPIDER
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
.
each particle