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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
3J2M
pdb_00003j2m
10.2210/pdb3j2m/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
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Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
Bacteriophage T4 tail
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
?
Cryogen Name
ETHANE
Sample Vitrification Details
?
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
3029
Reported Resolution (Å)
15
Resolution Method
FSC 0.5 CUT-OFF
Other Details
reconstruction done with in-house implementation of BP RP algorithm from SPIDER to support non-cubic reconstruction volumes
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
REFINEMENT PROTOCOL--rigid body
Data Acquisition
Detector Type
.
Electron Dose (electrons/Å
2
)
.
Imaging Experiment
Date of Experiment
2003-01-10
Temprature (Kelvin)
Microscope Model
FEI/PHILIPS CM300FEG/ST
Minimum Defocus (nm)
1000
Maximum Defocus (nm)
4000
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
GATAN LIQUID NITROGEN
Nominal Magnification
45000
Calibrated Magnification
47000
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
EMfit
?
RECONSTRUCTION
SPIDER
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
.
each particle image
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