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Organism Classification
Alphafold Collection
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Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
3J2J
pdb_00003j2j
10.2210/pdb3j2j/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
Empty coxsackievirus A9 capsid in complex with integrin alpha v beta 6
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
GATAN CRYOPLUNGE 3
Cryogen Name
ETHANE
Sample Vitrification Details
manual plunging into liquid ethane (GATAN CRYOPLUNGE 3)
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
1200
Reported Resolution (Å)
9.54
Resolution Method
FSC 0.5 CUT-OFF
Other Details
?
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
FLEXIBLE FIT
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
REFINEMENT PROTOCOL--flexible fitting
Data Acquisition
Detector Type
.
Electron Dose (electrons/Å
2
)
.
Imaging Experiment
Date of Experiment
2011-02-01
Temprature (Kelvin)
Microscope Model
FEI TECNAI F20
Minimum Defocus (nm)
830
Maximum Defocus (nm)
4120
Minimum Tilt Angle (degrees)
0.0
Maximum Tilt Angle (degrees)
0.0
Nominal CS
?
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
GATAN LIQUID NITROGEN
Nominal Magnification
62000
Calibrated Magnification
62000
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
200
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
iMODFIT
?
RECONSTRUCTION
Auto3DEM
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
.
whole micrograph