Home
About
Browse
Covid-19
Organism Classification
Alphafold Collection
Virus Classification
Indian Data
Contact
Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
3J24
pdb_00003j24
10.2210/pdb3j24/pdb
Download file
FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
Complement decay-accelerating factor bound to coxsackievirus B3-RD strain
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
HOMEMADE PLUNGER
Cryogen Name
ETHANE
Sample Vitrification Details
Blotted before plunging in liquid ethane (homemade plunger).
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
3010
Reported Resolution (Å)
9
Resolution Method
?
Other Details
?
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
average map value
Overall B Value
?
Fitting Procedure
?
Details
METHOD--Local refinement, rigid body REFINEMENT PROTOCOL--rigid body
Data Acquisition
Detector Type
KODAK SO-163 FILM
Electron Dose (electrons/Å
2
)
24.0
Imaging Experiment
Date of Experiment
2006-08-04
Temprature (Kelvin)
Microscope Model
FEI/PHILIPS CM300FEG/T
Minimum Defocus (nm)
1000
Maximum Defocus (nm)
4600
Minimum Tilt Angle (degrees)
0.00
Maximum Tilt Angle (degrees)
0.00
Nominal CS
2.0
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
GATAN LIQUID NITROGEN
Nominal Magnification
45000
Calibrated Magnification
47000
Source
TUNGSTEN HAIRPIN
Acceleration Voltage (kV)
300
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
CTF CORRECTION
CTFFIND
?
MODEL FITTING
UCSF Chimera
?
PARTICLE SELECTION
autopp
?
PARTICLE SELECTION
RobEM
?
RECONSTRUCTION
Auto3DEM
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
.
AUTO3DEM