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Organism Classification
Alphafold Collection
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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
3J05
pdb_00003j05
10.2210/pdb3j05/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
Dengue virus serotype 1 with Fab fragment of human monoclonal antibody 14c10
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK I
Cryogen Name
ETHANE
Sample Vitrification Details
?
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
2129
Reported Resolution (Å)
7
Resolution Method
FSC 0.5 CUT-OFF
Other Details
particles were selected manually
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
correlation
Overall B Value
?
Fitting Procedure
?
Details
REFINEMENT PROTOCOL--rigid body DETAILS--The domains were fitted separately using Fit In Map feature in Chimera
Data Acquisition
Detector Type
GENERIC GATAN
Electron Dose (electrons/Å
2
)
16
Imaging Experiment
Date of Experiment
2010-09-27
Temprature (Kelvin)
Microscope Model
FEI TITAN KRIOS
Minimum Defocus (nm)
760
Maximum Defocus (nm)
4900
Minimum Tilt Angle (degrees)
0.0
Maximum Tilt Angle (degrees)
0.0
Nominal CS
2.7
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
OTHER
Nominal Magnification
47000
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
UCSF Chimera
?
RECONSTRUCTION
EMAN
?
RECONSTRUCTION
MPSA
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
.
each particle