Home
About
Browse
Covid-19
Organism Classification
Alphafold Collection
Indian Data
Contact
Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
3IYP
pdb_00003iyp
10.2210/pdb3iyp/pdb
Download file
FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
Human Echovirus 7 in complex with Decay-accelerating Factor (DAF)
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
?
Cryogen Name
ETHANE
Sample Vitrification Details
?
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
11430
Reported Resolution (Å)
7.2
Resolution Method
FSC 0.5 CUT-OFF
Other Details
?
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
?
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
DETAILS--EV7 capsid protein coordinates were positioned into the cryoEM reconstruction by superimposing icosahedral symmetry elements.
Data Acquisition
Detector Type
KODAK SO-163 FILM
Electron Dose (electrons/Å
2
)
20
Imaging Experiment
Date of Experiment
2000-01-01
Temprature (Kelvin)
Microscope Model
FEI/PHILIPS CM300FEG/T
Minimum Defocus (nm)
1120
Maximum Defocus (nm)
3670
Minimum Tilt Angle (degrees)
0.0
Maximum Tilt Angle (degrees)
0.0
Nominal CS
?
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
OTHER
Nominal Magnification
?
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
Micrographs were digitized with a Zeiss PHODIS microdensitometer at 7-micron intervals.
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
EMfit
?
RECONSTRUCTION
Auto3DEM
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
.
Each particle