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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
3IYI
pdb_00003iyi
10.2210/pdb3iyi/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
P22 Procapsid Shell
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
HOMEMADE PLUNGER
Cryogen Name
ETHANE
Sample Vitrification Details
?
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
11997
Reported Resolution (Å)
9.1
Resolution Method
FSC 0.5 CUT-OFF
Other Details
( Details about the particle: data were collected on film )
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
FLEXIBLE FIT
Refinement Target
cross-correlation coefficient
Overall B Value
?
Fitting Procedure
?
Details
METHOD--local refinement, flexible fitting REFINEMENT PROTOCOL--rigid body
Data Acquisition
Detector Type
KODAK SO-163 FILM
Electron Dose (electrons/Å
2
)
8
Imaging Experiment
Date of Experiment
2009-01-01
Temprature (Kelvin)
Microscope Model
FEI POLARA 300
Minimum Defocus (nm)
410
Maximum Defocus (nm)
3650
Minimum Tilt Angle (degrees)
-9999.0
Maximum Tilt Angle (degrees)
-9999.0
Nominal CS
2.3
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
OTHER
Nominal Magnification
39000
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
200
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
Coot
?
MODEL FITTING
MODELLER
?
RECONSTRUCTION
Auto3DEM
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
.
ROBEM