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Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
3DWU
pdb_00003dwu
10.2210/pdb3dwu/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
eEF2.80S.AlF4.GDP complex
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK I
Cryogen Name
NITROGEN
Sample Vitrification Details
Cryogen ETHANE (93K), two-face blotting for 1 second
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
28242
Reported Resolution (Å)
12.6
Resolution Method
FSC
Other Details
Single particle reconstruction, resolution estimated: FSC cut-off at 0.15
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
correlation coefficient
Overall B Value
?
Fitting Procedure
?
Details
METHOD--manual REFINEMENT PROTOCOL--Fitted as rigid body. Current model was aligned to the helix A of the fitted eEF2 coordinates (PDB entry 3DNY) which is located next to the switch I sequence. The coordinates for this entry are based on manual fitting of the coordinates into cryo-EM density map. Therefore, authors did not deposit structure factors.
Data Acquisition
Detector Type
.
Electron Dose (electrons/Å
2
)
10
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
FEI TECNAI F20
Minimum Defocus (nm)
1500
Maximum Defocus (nm)
4500
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
?
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
?
Nominal Magnification
50000
Calibrated Magnification
49650
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
200
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
O
?
RECONSTRUCTION
SPIDER
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
.
segregation in defocus groups and correction in volumes