Home
About
Browse
Covid-19
Organism Classification
Alphafold Collection
Virus Classification
Indian Data
Documentation
Contact
Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
3C9K
pdb_00003c9k
10.2210/pdb3c9k/pdb
Download file
FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
Histone Octamer Tubular Crystal
Specimen Preperation
Sample Aggregation State
FILAMENT
Vitrification Instrument
?
Cryogen Name
?
Sample Vitrification Details
Negative Stain 0.2% Uranyl Acetate
3D Reconstruction
Reconstruction Method
HELICAL
Number of Particles
3500
Reported Resolution (Å)
20
Resolution Method
?
Other Details
11-fold rotational symmetry imposed during backprojection
Refinement Type
Symmetry Type
HELICAL
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
Cross-correlation and van der Waals energy
Overall B Value
?
Fitting Procedure
?
Details
METHOD--Because of the helical line group, the dyad axis is constrained to lie facing the helical axis and reduces the search to rotations and translations about this dyad REFINEMENT PROTOCOL--Constrained Rigid Body
Data Acquisition
Detector Type
KODAK SO-163 FILM
Electron Dose (electrons/Å
2
)
100
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
ZEISS LEO912
Minimum Defocus (nm)
1000
Maximum Defocus (nm)
800
Minimum Tilt Angle (degrees)
0
Maximum Tilt Angle (degrees)
0
Nominal CS
?
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
?
Nominal Magnification
50000
Calibrated Magnification
?
Source
TUNGSTEN HAIRPIN
Acceleration Voltage (kV)
120
Imaging Details
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
Feedback
Feedback Form
Name
Email
Institute
Feedback
Submit