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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
3C6D
pdb_00003c6d
10.2210/pdb3c6d/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
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MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
DENGUE-2 IMMATURE PARTICLE
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
HOMEMADE PLUNGER
Cryogen Name
ETHANE
Sample Vitrification Details
?
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
2741
Reported Resolution (Å)
12.500
Resolution Method
?
Other Details
?
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
USE PROGRAM EMFIT, SEARCH FOR POSTION WHERE ATOMS OCCUPY MOST EM DENSITY PEAKS
Overall B Value
?
Fitting Procedure
?
Details
METHOD--SEE PRIMARY CITATION REFINEMENT PROTOCOL--RIGID BODY
Data Acquisition
Detector Type
KODAK SO-163 FILM
Electron Dose (electrons/Å
2
)
15.0
Imaging Experiment
Date of Experiment
2008-04-04
Temprature (Kelvin)
Microscope Model
FEI/PHILIPS CM300FEG/T
Minimum Defocus (nm)
1662.00
Maximum Defocus (nm)
3640.00
Minimum Tilt Angle (degrees)
0.00
Maximum Tilt Angle (degrees)
0.00
Nominal CS
2.00
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
.
Nominal Magnification
45000
Calibrated Magnification
33000
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
EMfit
?
RECONSTRUCTION
SPIDER
?
RECONSTRUCTION
Xmipp
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details