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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
2YPW
pdb_00002ypw
10.2210/pdb2ypw/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
TRAN, TRAO AND TRAF COMPLEX ENCODED BY PKM101
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
?
Cryogen Name
ETHANE
Sample Vitrification Details
VITRIFICATION 1 -- CRYOGEN- ETHANE, HUMIDITY- 60, TEMPERATURE- 92, INSTRUMENT- NONE, METHOD- BLOT 3 SECONDS BEFORE PLUNGING,
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
3805
Reported Resolution (Å)
12.4
Resolution Method
?
Other Details
THE FILE CORRESPONDS TO AN ATOMIC MODEL FOR THE N -TERMINUS OF TRAO SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-2232. (DEPOSITION ID: 11218).
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
?
Refinement Protocol
FLEXIBLE FIT
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
METHOD--RIGID BODY AND FLEXIBLE FITTING
Data Acquisition
Detector Type
GENERIC GATAN
Electron Dose (electrons/Å
2
)
20
Imaging Experiment
Date of Experiment
2008-01-01
Temprature (Kelvin)
Microscope Model
FEI TECNAI F20
Minimum Defocus (nm)
1250
Maximum Defocus (nm)
3500
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2.1
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
.
Nominal Magnification
66000
Calibrated Magnification
68100
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
200
Imaging Details
4000X4000 CCD
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
Situs
?
MODEL FITTING
UCSF Chimera
?
RECONSTRUCTION
IMAGIC
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
?
PHASE FLIPPING, EACH CCD IMAGE