2YCT

X-RAY DIFFRACTION


Crystallization Details
Method pH Temprature Details
X-RAY DIFFRACTION 8.0 293 CRYSTALS OF THE C. FREUNDII TPL WERE GROWN AT 277 AND 293 K USING THE HANGING DROP VAPOR DIFFUSION METHOD. THE BEST CRYSTALS WERE OBTAINED BY MIXING 2 UL OF THE PROTEIN SOLUTION (18-20 MG/ML) CONTAINING 50MM K-PHOSPHATE PH 8.0, 0.5 MM PLP, 1MM DDT WITH AN EQUAL VOLUME OF THE RESERVOIR SOLUTION CONTAINING 50 MM TRIETHANOLAMINE BUFFER (PH 8.0), 0.5 MM PLP, 2 MM DDT, 0.4 M KCL, AND 35-38% (W/V) POLY(ETHYLENE GLYCOL) 5000 MONOMETHYL ETHER. THE ALANINE QUINONOID COMPLEX WITH PYRIDINE N-OXIDE (9PO) WAS PREPARED BY SOAKING WILD TYPE TPL CRYSTALS IN THE STABILIZATION SOLUTION CONTAINING 40% (W/V) POLY(ETHYLENE GLYCOL) 5000 MONOMETHYL ETHER (PEG 5000 MME), 50 MM TRIETHANOLAMINE PH 8.0, 0.25 M KCL, 0.2 MM PYRIDOXAL 5-PHOSPHATE (PLP), 0.5 MM DITHIOTHREITOL (DTT), WITH ADDITION OF 100 MM L- ALANINE AND A SATURATING CONCENTRATION OF PYRIDINE N-OXIDE. SINCE THE CRYSTALS QUALITY DETERIORATED RAPIDLY, THE SOAKING TIME WAS RESTRICTED TO ABOUT 20 S.
Unit Cell:
a: 133.993 Å b: 143.770 Å c: 60.081 Å α: 90.00° β: 90.00° γ: 90.00°
Symmetry:
Space Group: P 21 21 2
Crystal Properties:
Matthew's Coefficient: 2.8 Solvent Content: 56.5
Refinement Statistics
Diffraction ID Structure Solution Method Cross Validation Method Resolution Limit (High) Resolution Limit (Low) Number of Reflections (Observed) Number of Reflections (R-free) Percent Reflections (Observed) R-Work R-Free Mean Isotropic
X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.25 20.00 54235 995 98.68 0.14003 0.18110 28.850
Data Collection
Overall
Resolution Limit (High) Resolution Limit (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.25 20.00 99.0 0.05 ? 13.80 3.4 ? 55230 ? -3.0 ?
Highest Resolution Shell
# Resolution Limits (Low) Resolution Limits (High) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1 2.25 2.29 94.0 ? 4.50 2.8
Diffraction
Diffraction experiment
Crystal ID Scattering Type Data Collection Temprature Detector Detector Type Details Collection Date Monochromator Protocol
1 100 K
Radiation Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU RU200 ? ? ?
Software
Software Name Purpose Version
REFMAC refinement 5.4.0077
DENZO data reduction .
SCALEPACK data scaling .
AMoRE phasing .