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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
2Y9K
pdb_00002y9k
10.2210/pdb2y9k/pdb
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FASTA
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Binary MMCIF
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Structure Factors
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Validation File (XML)
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Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
NEEDLE COMPLEX
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
?
Cryogen Name
ETHANE
Sample Vitrification Details
LIQUID ETHANE
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
?
Reported Resolution (Å)
8.3
Resolution Method
FSC 0.5 CUT-OFF
Other Details
RESOLUTION 8.3 ANGSTROM (0.5 FSC), 6.7 ANGSTROM (HALF BIT) SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-1871. (DEPOSITION ID: 7820).
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
Cross-correlation coefficient
Overall B Value
?
Fitting Procedure
?
Details
METHOD--RIGID BODY FITTING
Data Acquisition
Detector Type
GENERIC GATAN (4k x 4k)
Electron Dose (electrons/Å
2
)
?
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
FEI POLARA 300
Minimum Defocus (nm)
1000
Maximum Defocus (nm)
2500
Minimum Tilt Angle (degrees)
0
Maximum Tilt Angle (degrees)
?
Nominal CS
2
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
.
Nominal Magnification
93000
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
ACUAL MAGNIFICATION AT CCD 112968, CAMERA PIXEL SIZE 15UM, 1.33 ANGSTROM PER PIXEL, DATA COLLECTED SEMI- AUTOMATICALLY USING POINT-2-POINT (DEVELOPED IN-HOUSE)
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
UCSF Chimera
?
RECONSTRUCTION
IMAGIC
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
?
EACH CCD FRAME
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