| simulated annealing |
REFINEMENT DETAILS CAN BE FOUND IN THE PRIMARY CITATION. THE INITIAL STRUCTURE OF THE EI DIMER COMPLEXED WITH HPR WAS CONSTRUCTED AS A HYBRID OF THE CRYSTAL STRUCTURE OF PHOSPHORYLATED EI INTERMEDIATE CAPTURED BY THE INHIBITOR OXALATE (PDB CODE 2HWG) AND THE NMR STRUCTURE OF THE EIN-HPR COMPLEX (PDB CODE 3EZA). THROUGHOUT THE STRUCTURE DETERMINATION, THE BACKBONE ATOMIC COORDINATES OF EACH EIN-HPR COMPLEX (RESIDUES 1-254 AND 601-685) WERE TREATED AS RIGID BODIES, WITH THE TWO SYMMETRY RELATED EIC DOMAINS (RESIDUES 262- 573) HELD FIXED IN SPACE. COORDINATES IN THE LINKER REGION (RESIDUES 255-261) WERE ALLOWED VARYING DEGREES OF FREEDOM DURING THE CALCULATION THROUGH THE USE OF THE INTERNAL VARIABLE MODULE (IVM) OF XPLOR-NIH. THE ENSEMBLE OF CALCULATED STRUCTURES FELL IN TWO CLUSTERS, THE REGULARIZED REFINED MEAN OF EACH IS INCLUDED BELOW AS MODELS 1 AND 2, RESPECTIVELY. STRUCTURAL STATISTICS: CLUSTER 1: SAXS CHI2 Q->0.44 0.63+/-0.11 SAXS CHI2 FULL RANGE FIT 0.45+/-0.07 SANS CHI2 1.38+/-0.51 RDC R-FACTOR 16.30+/-0.03 % RDC DA 13.73+/-0.05 HZ RDC RHOMBICITY 0.63+/-0.00 MODEL 1: SAXS CHI2 Q->0.44 0.62 SAXS CHI2 FULL RANGE FIT 0.42 SANS CHI2 1.30 RDC R-FACTOR 16.27 % RDC DA 13.74 HZ RDC RHOMBICITY 0.63 STRUCTURAL STATISTICS: CLUSTER 2 SAXS CHI2 Q->0.44 0.76+/-0.07 SAXS CHI2 FULL RANGE FIT 0.48+/-0.06 SANS CHI2 2.97+/-0.62 RDC R-FACTOR 16.25+/-0.02 % RDC DA 13.83+/-0.08 HZ RDC RHOMBICITY 0.63+/-0.00 MODEL 2 SAXS CHI2 Q->0.44 0.78 SAXS CHI2 FULL RANGE FIT 0.49 SANS CHI2 2.82 RDC R-FACTOR 16.25 % RDC DA 13.85 HZ RDC RHOMBICITY 0.63 |
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